Biophysical reviews top five: atomic force microscopy in biophysics

Biophysical Reviews

Reconstruction of Three-Dimensional Conformations of Bacterial
ClpB from High-Speed Atomic-Force-Microscopy Images

Frontiers in Molecular
Biosciences

A facile combinatorial approach to construct a ratiometric fluorescent
sensor: application for the real-time sensing of cellular pH changes

Chemical Science

DNA Nanotechnology to Disclose Molecular Events at the Nanoscale
ａnd Mesoscale Levels

Springer Nature

Quantitative description of a contractile macromolecular machine

Science Advances

Dynamic Assembly/Disassembly of Staphylococcus aureus FtsZ
Visualized by High-Speed Atomic Force Microscopy

International Journal of
Molecular Sciences 2021, Vol. 22, Page 1697

Localization atomic force microscopy

Nature 2021 594:7863

Movements of mycoplasma mobile gliding machinery detected by
high-speed atomic force microscopy

mBio

An ultra-wide scanner for large-area high-speed atomic force
microscopy with megapixel resolution

Scientific Reports 2021 11:1

A molecularly engineered, broad-spectrum anti-coronavirus lectin
inhibits SARS-CoV-2 and MERS-CoV infection in vivo

Research Square

Influenza virus ribonucleoprotein complex formation occurs in the
nucleolus

bioRxiv

Tardigrade Secretory-Abundant Heat-Soluble Protein Has a Flexible
β-Barrel Structure in Solution and Keeps This Structure in
Dehydration

Journal of Physical Chemistry B

Ultrastructure of influenza virus ribonucleoprotein complexes during
viral RNA synthesis

Communications Biology on

A facile combinatorial approach to construct a ratiometric fluorescent
sensor: application for the real-time sensing of cellular pH changes

Chemical Science

Deformation of microtubules regulates translocation dynamics of
kinesin

Science Advances

Unraveling the host-selective toxic interaction of cassiicolin with lipid
membranes and its cytotoxicity

bioRxiv

Nanostructure and thermoresponsiveness of poly( N -isopropyl
methacrylamide)-based hydrogel microspheres prepared via aqueous free radical precipitation polymerization

RSC Advances

JRAB/MICAL-L2 undergoes liquid–liquid phase separation to form
tubular recycling endosomes

Communications Biology 2021
4:1

Correlation of membrane protein conformational and functional
dynamics

Nature Communications 2021
12:1

Non-close-packed arrangement of soft elastomer microspheres on
solid substrates

RSC Advances

Folding RNA–Protein Complex into Designed Nanostructures

Methods in Molecular Biology

A glutamine sensor that directly activates TORC1

Communications Biology 2021
4:1

Architecture of zero-latency ultrafast amplitude detector for high-
speed atomic force microscopy

Applied Physics Letters

Correlative AFM and fluorescence imaging demonstrate nanoscale
membrane remodeling and ring-like and tubular structure formation by septins

Nanoscale

Desiccation-induced fibrous condensation of CAHS protein from an
anhydrobiotic tardigrade

bioRxiv

Construction of ferritin hydrogels utilizing subunit–subunit
interactions

PLOS ONE

Monomeric α-synuclein (αS) inhibits amyloidogenesis of human
prion protein (hPrP) by forming a stable αS-hPrP hetero-dimer.

Prion

Influence of protein adsorption on aggregation in prefilled syringes

Journal of Pharmaceutical
Sciences

Dynamic mechanisms of CRISPR interference by Escherichia coli
CRISPR-Cas3

bioRxiv

An RNA Triangle with Six Ribozyme Units Can Promote a Trans-
Splicing Reaction through Trimerization of Unit Ribozyme Dimers

Applied Sciences

Faster high-speed atomic force microscopy for imaging of
biomolecular processes

Rev. Sci. Instrum

Title: Identification of lectin receptors for conserved SARS-CoV-2
glycosylation sites

bioRxiv

Structural and dynamics analysis of intrinsically disordered proteins
by high-speed atomic force microscopy

Nature Nanotechnology

Millisecond Conformational Dynamics of Skeletal Myosin II Power
Stroke Studied by High-Speed Atomic Force Microscopy

ACS Nano

High-Speed Atomic Force Microscopy Reveals Spatiotemporal
Dynamics of Histone Protein H2A Involution by DNA Inchworming

The Journal of Physical
Chemistry Letters

Nanostructures, Thermoresponsiveness, and Assembly Mechanism
of Hydrogel Microspheres during Aqueous Free-Radical Precipitation Polymerization

Langmuir

Chained structure of dimeric F 1-like ATPase in Mycoplasma mobile
gliding machinery 4

bioRxiv

Lipid Membrane Interaction of Peptide/DNA Complexes Designed for
Gene Delivery

Langmuir

High-Speed Atomic Force Microscopy to Study Myosin Motility

Advances in Experimental
Medicine and Biology

Single-molecule level dynamic observation of disassembly of the
apo-ferritin cage in solution

Physical Chemistry Chemical
Physics

Atomic Force Microscopy of Biomembranes : A Tool for Studying the
Dynamic Behavior of Membrane Proteins

New Techniques for Studying
Biomembranes

Adenosine leakage from perforin-burst extracellular vesicles inhibits
perforin secretion by cytotoxic T-lymphocytes

PLOS ONE

High-Speed Atomic Force Microscopy Reveals the Structural
Dynamics of the Amyloid-β and Amylin Aggregation Pathways

International Journal of
Molecular Sciences 2020, Vol. 21, Page 4287

Molecular mechanism of the recognition of bacterially cleaved
immunoglobulin by the immune regulatory receptor LILRA2

Journal of Biological Chemistry

Biological physics by high-speed atomic force microscopy

Philosophical Transactions of
the Royal Society A: Mathematical, Physical and Engineering Sciences

Viral RNA recognition by LGP2 and MDA5, and activation of signaling
through step-by-step conformational changes

Nucleic Acids Research

Key Nucleation Stages and Associated Molecular Determinants and
Processes in pH-Induced Formation of Amyloid Beta Oligomers as Revealed by High-Speed AFM

bioRxiv

Novel Babesia bovis exported proteins that modify properties of
infected red blood cells

PLoS Pathogens

DNA origami demonstrate the unique stimulatory power of single
pMHCs as T-cell antigens

Proceedings of the National
Academy of Sciences

Structural insights into the mechanism of rhodopsin
phosphodiesterase

Nature Communications

Structural insights into the mechanism of rhodopsin
phosphodiesterase

Nature Communications

High-Speed AFM Reveals Molecular Dynamics of Human Influenza A
Hemagglutinin and Its Interaction with Exosomes

Nano Letters

DNA Ring Motif with Flexible Joints

Micromachines

Nanopores: a versatile tool to study protein dynamics

Essays in Biochemistry

Geometrical Characterization of Glass Nanopipettes with Sub-10 nm
Pore Diameter by Transmission Electron Microscopy

Analytical Chemistry

Carbon nanotube porin diffusion in mixed composition supported
lipid bilayers

Scientific Reports

One-Step Calibration of AFM in Liquid

Frontiers in Physics

Nanoscale interaction of RecG with mobile fork DNA

Nanoscale Advances

Convergent evolution of processivity in bacterial and fungal
cellulases

Proceedings of the National
Academy of Sciences

Convergent evolution of processivity in bacterial and fungal
cellulases

Proceedings of the National
Academy of Sciences of the United States of America

Interaction of the motor protein SecA and the bacterial protein
translocation channel SecYEG in the absence of ATP

Nanoscale Advances

Nanoreporter of an Enzymatic Suicide Inactivation Pathway

Nano Letters

High-speed atomic force microscopy highlights new molecular
mechanism of daptomycin action

Nature Communications

Direct visualization of the conformational change of FUS/TLS upon
binding to promoter-associated non-coding RNA

Chemical Communications

Thermoresponsive Micellar Assembly Constructed from a Hexameric
Hemoprotein Modified with Poly(N-isopropylacrylamide) toward an Artificial Light-Harvesting System

Journal of the American
Chemical Society

Schizorhodopsins: A family of rhodopsins from Asgard archaea that
function as light-driven inward H + pumps

Science Advances

Two-State Exchange Dynamics in Membrane-Embedded
Oligosaccharyltransferase Observed in Real-Time by High-Speed AFM

Journal of Molecular Biology

Thermoresponsive structural changes of single poly(N-isopropyl
acrylamide) hydrogel microspheres under densely packed conditions on a solid substrate

Polymer Journal

High-Speed Atomic Force Microscopy Reveals Factors Affecting the
Processivity of Chitinases during Interfacial Enzymatic Hydrolysis of Crystalline Chitin

ACS Catalysis

Rad50 zinc hook functions as a constitutive dimerization module
interchangeable with SMC hinge

Nature Communications

Assembly mechanism of a supramolecular MS-ring complex to
initiate bacterial flagellar biogenesis in vibrio species

Journal of Bacteriology

Structural Dynamics of a Protein Domain Relevant to the Water-
Oxidizing Complex in Photosystem II as Visualized by High-Speed Atomic Force Microscopy

Journal of Physical Chemistry B

Recent advances in bioimaging with high-speed atomic force
microscopy

Biophysical Reviews

Dynamic behavior of an artificial protein needle contacting a
membrane observed by high-speed atomic force microscopy

Nanoscale

Enhanced enzymatic activity exerted by a packed assembly of a
single type of enzyme

Chemical Science

High Speed AFM and NanoInfrared Spectroscopy Investigation of A
β1–42 Peptide Variants and Their Interaction With
POPC/SM/Chol/GM1 Model Membranes

Frontiers in Molecular
Biosciences

The hierarchical assembly of septins revealed by high-speed AFM

Nature Communications

Millisecond dynamics of an unlabeled amino acid transporter

Nature Communications

Atg9 is a lipid scramblase that mediates autophagosomal membrane
expansion

Nature Structural & Molecular
Biology

A Simplified Cluster Analysis of Electron Track Structure for
Estimating Complex DNA Damage Yields

International Journal of
Molecular Sciences

Supramolecular tholos-like architecture constituted by archaeal
proteins without functional annotation

Scientific Reports

Studies on the impellers generating force in muscle

Biophysical Reviews

Diversity of physical properties of bacterial extracellular membrane
vesicles revealed through atomic force microscopy phase imaging

Nanoscale

High-Speed AFM Reveals Molecular Dynamics of Human Influenza A
Hemagglutinin and Its Interaction with Exosomes

Nano Letters

DNA density-dependent uptake of DNA origami-based two-or three-
dimensional nanostructures by immune cells

Nanoscale

Spatiotemporally tracking of nano-biofilaments inside the nuclear
pore complex core

Biomaterials

High-speed atomic force microscopy directly visualizes
conformational dynamics of the HIV Vif protein in complex with three host proteins

Journal of Biological Chemistry

Self- and Cross-Seeding on α-Synuclein Fibril Growth Kinetics and
Structure Observed by High-Speed Atomic Force Microscopy

ACS Nano

Liquidity Is a Critical Determinant for Selective Autophagy of Protein
Condensates

Molecular Cell

Capturing transient antibody conformations with DNA origami
epitopes

Nature Communications

Biophysics in Kanazawa University

Biophysical Reviews

Dynamics of oligomer and amyloid fibril formation by yeast prion
Sup35 observed by high-speed atomic force microscopy

Proceedings of the National
Academy of Sciences

Annexin-V stabilizes membrane defects by inducing lipid phase
transition

Nature Communications

Structure and mechanism of bactericidal mammalian perforin-2, an
ancient agent of innate immunity

Science Advances

Atomic Force Microscopy Visualizes Mobility of Photosynthetic
Proteins in Grana Thylakoid Membranes

Biophysical Journal

Construction of a Hexameric Hemoprotein Sheet and Direct
Observation of Dynamic Processes of Its Formation

Chemistry Letters

Single-molecule imaging analysis reveals the mechanism of a high-
catalytic-activity mutant of chitinase A from Serratia marcescens

Journal of Biological Chemistry

Direct observation and analysis of TET-mediated oxidation
processes in a DNA origami nanochip

Nucleic Acids Research

On-membrane dynamic interplay between anti-GM1 IgG antibodies
ａnd complement component C1q

International Journal of
Molecular Sciences

Zwitterionic Polypeptides: Chemoenzymatic Synthesis and Loosening
Function for Cellulose Crystals

Biomacromolecules